From a20d2577736af7dbd4741391a2d45915624afed9 Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 12 May 2011 00:49:31 +0000
Subject: [PATCH] Generating extensions for
 org.broadinstitute.sting.gatk.datasources.reads.utilities, including
 FindLargeShards.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5792 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/queue/extensions/gatk/GATKExtensionsGenerator.java   | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java b/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
index 6119e20a6..77ac948e9 100644
--- a/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
+++ b/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
@@ -189,7 +189,8 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
      */
     private static final List<String> gatkPackages = Arrays.asList(
             "org.broadinstitute.sting.gatk",
-            "org.broadinstitute.sting.analyzecovariates");
+            "org.broadinstitute.sting.analyzecovariates",
+            "");
 
     /**
      * Returns true if the class is part of the GATK.