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Bug fix for NPE when timer wasn't initialized

This commit is contained in:
Mark DePristo 2011-09-20 13:59:59 -04:00
parent b7511c5ff3
commit a1b4cafe7a
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
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@ -358,7 +358,7 @@ public abstract class TraversalEngine<M,T,WalkerType extends Walker<M,T>,Provide
public void printOnTraversalDone() { public void printOnTraversalDone() {
printProgress(null, null, true); printProgress(null, null, true);
final double elapsed = timer.getElapsedTime(); final double elapsed = timer == null ? 0 : timer.getElapsedTime();
ReadMetrics cumulativeMetrics = engine.getCumulativeMetrics(); ReadMetrics cumulativeMetrics = engine.getCumulativeMetrics();