From a0e8de40cf51e95feddac567b1588e1ad86ab853 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 22 Feb 2010 23:54:52 +0000
Subject: [PATCH] Bug fix: at one locus in the dataset, two reads were dropped.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2872 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../datasources/shards/IndexDelimitedLocusShardStrategy.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/shards/IndexDelimitedLocusShardStrategy.java b/java/src/org/broadinstitute/sting/gatk/datasources/shards/IndexDelimitedLocusShardStrategy.java
index e4313f0ce..2b90a8a16 100755
--- a/java/src/org/broadinstitute/sting/gatk/datasources/shards/IndexDelimitedLocusShardStrategy.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/shards/IndexDelimitedLocusShardStrategy.java
@@ -111,7 +111,7 @@ public class IndexDelimitedLocusShardStrategy implements ShardStrategy {
                 int binStart = filePointer!=null ? blockDrivenDataSource.getFirstLocusInBin(filePointer.bin) : 0;
                 int binStop = filePointer!=null ? blockDrivenDataSource.getLastLocusInBin(filePointer.bin) : 0;
 
-                while(binStop <= locationStart && binIterator.hasNext()) {
+                while(binStop < locationStart && binIterator.hasNext()) {
                     if(filePointer != null && filePointer.locations.size() > 0)
                         filePointers.add(filePointer);