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Bug fix: at one locus in the dataset, two reads were dropped. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2872 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2010-02-22 23:54:52 +00:00
parent 5546aa4416
commit a0e8de40cf
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/datasources/shards/IndexDelimitedLocusShardStrategy.java
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@ -111,7 +111,7 @@ public class IndexDelimitedLocusShardStrategy implements ShardStrategy {
int binStart = filePointer!=null ? blockDrivenDataSource.getFirstLocusInBin(filePointer.bin) : 0;
int binStop = filePointer!=null ? blockDrivenDataSource.getLastLocusInBin(filePointer.bin) : 0;
while(binStop <= locationStart && binIterator.hasNext()) {
while(binStop < locationStart && binIterator.hasNext()) {
if(filePointer != null && filePointer.locations.size() > 0)
filePointers.add(filePointer);