From a0de269c4b4ca2297f4ced6854ff5dedc86ccedd Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 10 Oct 2010 20:11:51 +0000
Subject: [PATCH] Better message

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4474 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/utils/exceptions/UserException.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/utils/exceptions/UserException.java b/java/src/org/broadinstitute/sting/utils/exceptions/UserException.java
index f9902035d..146bf75bd 100755
--- a/java/src/org/broadinstitute/sting/utils/exceptions/UserException.java
+++ b/java/src/org/broadinstitute/sting/utils/exceptions/UserException.java
@@ -118,7 +118,7 @@ public class UserException extends ReviewedStingException {
 
     public static class ReadMissingReadGroup extends MalformedBam {
         public ReadMissingReadGroup(SAMRecord read) {
-            super(read, String.format("Read %s is missing the read group, which is required by the GATK", read.getReadName()));
+            super(read, String.format("Read %s is either missing the read group or its read group is not defined in the BAM header, both of which are required by the GATK", read.getReadName()));
         }
     }