From a0a581171b839d82d0ebe092e16df19ad41568f5 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 27 Apr 2009 20:43:06 +0000
Subject: [PATCH] print out the last interval

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@549 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/IndelIntervalWalker.java   | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelIntervalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelIntervalWalker.java
index 700708de5..a372420e5 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelIntervalWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelIntervalWalker.java
@@ -59,7 +59,10 @@ public class IndelIntervalWalker extends ReadWalker<IndelIntervalWalker.Interval
         return sum.merge(value);
     }
 
-    public void onTraversalDone(Interval result) {}
+    public void onTraversalDone(Interval result) {
+        if ( result != null && result.indelCount >= minIntervalIndelCount )
+            out.println(result);        
+    }
 
     public class Interval {
         public GenomeLoc readLoc = null;