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print out the last interval 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@549 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-04-27 20:43:06 +00:00
parent a343f3eab7
commit a0a581171b
1 changed files with 4 additions and 1 deletions
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5
java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelIntervalWalker.java
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@ -59,7 +59,10 @@ public class IndelIntervalWalker extends ReadWalker<IndelIntervalWalker.Interval
return sum.merge(value);
}
public void onTraversalDone(Interval result) {}
public void onTraversalDone(Interval result) {
if ( result != null && result.indelCount >= minIntervalIndelCount )
out.println(result);
}
public class Interval {
public GenomeLoc readLoc = null;