Merged bug fix from Stable into Unstable

2013-03-05 09:03:48 -05:00 · 2013-03-05 09:03:48 -05:00 · a037423225
parent 74a5cd5956 7e1bfd6a7c
commit a037423225
1 changed files with 1 additions and 1 deletions
--- a/protected/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
+++ b/protected/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
@ -397,7 +397,7 @@ public class PairHMMIndelErrorModel {

                        if (previousHaplotypeSeen == null) {
                            //no need to reallocate arrays for each new haplotype, as length won't change
-                            pairHMM.initialize(Y_METRIC_LENGTH, X_METRIC_LENGTH);
+                            pairHMM.initialize(X_METRIC_LENGTH, Y_METRIC_LENGTH);
                        }

                        int startIndexInHaplotype = 0;