no sort order

subtle bug fixed.
2011-10-20 18:44:09 -04:00 · 2011-10-20 18:44:09 -04:00 · 9f867d77ca
parent c9d8b22092
commit 9f867d77ca
1 changed files with 1 additions and 0 deletions
--- a/public/scala/src/org/broadinstitute/sting/queue/extensions/picard/SamToFastq.scala
+++ b/public/scala/src/org/broadinstitute/sting/queue/extensions/picard/SamToFastq.scala
@ -58,6 +58,7 @@ class SamToFastq extends org.broadinstitute.sting.queue.function.JavaCommandLine

  override def inputBams = input
  override def outputBam = null
+  this.sortOrder = null

  override def commandLine = super.commandLine +
       " FASTQ=" + fastq +