From 9f3482ef11efbecb84d7700bd47add7938b12228 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 9 Oct 2009 17:43:26 +0000
Subject: [PATCH] VCF is both a multi- and single- sample format, so we
 shouldn't be throwing an exception when used for SS

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1803 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java   | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
index a76ea29ad..ac46c2961 100644
--- a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
+++ b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFGenotypeWriterAdapter.java
@@ -8,6 +8,7 @@ import org.broadinstitute.sting.utils.genotype.ReadBacked;
 import org.broadinstitute.sting.utils.genotype.SampleBacked;
 
 import java.io.File;
+import java.util.Arrays;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.List;
@@ -82,7 +83,7 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
      */
     @Override
     public void addGenotypeCall(Genotype call) {
-        throw new UnsupportedOperationException("VCF is a multi sample fomat");
+        addMultiSampleCall(Arrays.asList(call));
     }
 
     /**
@@ -92,7 +93,7 @@ public class VCFGenotypeWriterAdapter implements GenotypeWriter {
      */
     @Override
     public void addNoCall(int position) {
-        throw new UnsupportedOperationException("VCF is a multi sample fomat");
+        throw new UnsupportedOperationException("We don't currently support no-calls in VCF");
     }
 
     /** finish writing, closing any open files. */