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Enable adding contigs to VariantContextWriters on output

This commit is contained in:
Mark DePristo 2012-05-31 11:21:08 -04:00
parent 8fc1a26ac7
commit 9eb83a0771
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/io/stubs/VariantContextWriterStub.java
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@ -215,7 +215,7 @@ public class VariantContextWriterStub implements Stub<VariantContextWriter>, Var
vcfHeader.addMetaDataLine(commandLineArgHeaderLine);
}
//vcfHeader = VCFUtils.withUpdatedContigs(vcfHeader, engine);
vcfHeader = VCFUtils.withUpdatedContigs(vcfHeader, engine);
}
outputTracker.getStorage(this).writeHeader(vcfHeader);