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Integration test for the -nt race condition corrupting AD and PL fields

This commit is contained in:
Joel Thibault 2014-02-04 11:45:18 -05:00
parent 1de7a27471
commit 9eaee8c73c
1 changed files with 5 additions and 0 deletions
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5
protected/gatk-protected/src/test/java/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsParallelIntegrationTest.java
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@ -92,6 +92,11 @@ public class SelectVariantsParallelIntegrationTest extends WalkerTest {
final String args = "-select 'DP > 30' -V " + testfile; final String args = "-select 'DP > 30' -V " + testfile;
new ParallelSelectTestProvider(b37KGReference, args, "c64b45a14d41b1e5cddbe036b47e7519", nt); new ParallelSelectTestProvider(b37KGReference, args, "c64b45a14d41b1e5cddbe036b47e7519", nt);
} }
{ // AD and PL decoding race condition
final String testfile = privateTestDir + "race_condition.vcf";
final String args = "-env -sn SAMPLE -L 1:1-10,000,000 -V " + testfile;
new ParallelSelectTestProvider(b37KGReference, args, "62e6156387d6e91bd2b08ef649cb1129", nt);
}
} }
return ParallelSelectTestProvider.getTests(ParallelSelectTestProvider.class); return ParallelSelectTestProvider.getTests(ParallelSelectTestProvider.class);