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Fixed VCFGatherFunction to not provide incorrect rod_priority_list 

-- simply don't provide one, since you are just 'cating' the files together and genotypes never overlap
This commit is contained in:
Mark DePristo 2011-08-10 07:28:35 -04:00
parent 1ea5ec276b
commit 9e53fd6880
1 changed files with 0 additions and 1 deletions
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public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala
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@ -44,7 +44,6 @@ class VcfGatherFunction extends CombineVariants with GatherFunction {
this.intervalsString = this.originalGATK.intervalsString
this.variant = this.gatherParts.zipWithIndex map { case (input, index) => new TaggedFile(input, "input"+index) }
this.rod_priority_list = (0 until this.gatherParts.size).map("input"+_).mkString(",")
this.out = this.originalOutput
this.assumeIdenticalSamples = true