create a new tool CountMutationTypes

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The new tool gets an VCF file as an input and create a GATK report with the percentages of each mutation type (e.g. A->G, A->T...).
It allow the user to filter sites that will be count based of JXEL or based on the varait quals
A user can aslo print 12 VCF files (one for each mutation) with the VCF line of the mutations that were counted.

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Ami Levy-Moonshine 2014-03-19 15:23:00 -04:00

parent 58c8b2dd84

commit 9e5333f1d1

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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