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Merge branch 'master' of ssh://gsa1/humgen/gsa-scr1/gsa-engineering/git/unstable

This commit is contained in:
Mark DePristo 2011-12-07 13:36:16 -05:00
parent 69b19047ba 44bc8766d7
commit 9def841275
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
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@ -469,7 +469,7 @@ public class GenomeAnalysisEngine {
throw new ReviewedStingException("Unable to determine walker type for walker " + walker.getClass().getName());
}
else {
final int SHARD_SIZE = walker instanceof RodWalker ? 100000000 : 100000;
final int SHARD_SIZE = walker instanceof RodWalker ? 1000000 : 100000;
if(intervals == null)
return referenceDataSource.createShardsOverEntireReference(readsDataSource,genomeLocParser,SHARD_SIZE);
else