diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/ClipReadsWalkersIntegrationTest.java b/java/test/org/broadinstitute/sting/playground/gatk/walkers/ClipReadsWalkersIntegrationTest.java index 4cde739d7..49bb1578c 100755 --- a/java/test/org/broadinstitute/sting/playground/gatk/walkers/ClipReadsWalkersIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/playground/gatk/walkers/ClipReadsWalkersIntegrationTest.java @@ -3,16 +3,14 @@ package org.broadinstitute.sting.playground.gatk.walkers; import org.broadinstitute.sting.WalkerTest; import org.junit.Test; -import java.util.HashMap; -import java.util.Map; +import java.io.File; import java.util.Arrays; import java.util.List; -import java.io.File; public class ClipReadsWalkersIntegrationTest extends WalkerTest { public void testClipper(String name, String args, String md51, String md52) { WalkerTestSpec spec = new WalkerTestSpec( - "-R /home/radon01/depristo/work/humanref/Homo_sapiens_assembly18.fasta " + + "-R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta " + "-T ClipReads " + "-I /humgen/gsa-scr1/GATK_Data/Validation_Data/clippingReadsTest.bam " + "-o %s " +