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some integration test clean-up 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2229 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-12-02 21:11:02 +00:00
parent a09fee2b5e
commit 9d598f1c82
1 changed files with 2 additions and 4 deletions
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6
java/test/org/broadinstitute/sting/playground/gatk/walkers/ClipReadsWalkersIntegrationTest.java
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@ -3,16 +3,14 @@ package org.broadinstitute.sting.playground.gatk.walkers;
import org.broadinstitute.sting.WalkerTest;
import org.junit.Test;
import java.util.HashMap;
import java.util.Map;
import java.io.File;
import java.util.Arrays;
import java.util.List;
import java.io.File;
public class ClipReadsWalkersIntegrationTest extends WalkerTest {
public void testClipper(String name, String args, String md51, String md52) {
WalkerTestSpec spec = new WalkerTestSpec(
"-R /home/radon01/depristo/work/humanref/Homo_sapiens_assembly18.fasta " +
"-R /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta " +
"-T ClipReads " +
"-I /humgen/gsa-scr1/GATK_Data/Validation_Data/clippingReadsTest.bam " +
"-o %s " +