diff --git a/R/VariantReport/VariantReport.R b/R/VariantReport/VariantReport.R index 525b7ea4d..7f83eacfd 100644 --- a/R/VariantReport/VariantReport.R +++ b/R/VariantReport/VariantReport.R @@ -249,8 +249,14 @@ plot.alleleCountSpectrum <- function(eval, novelty_name="all", col=c("#FF6342", ); } -eval.getMetricsByAc <- function(eval, jexl_expression, novelty_name="all") { - piece = eval$MetricsByAc[which(eval$MetricsByAc$evaluation_name == "eval" & eval$MetricsByAc$comparison_name == "dbsnp" & as.character(eval$MetricsByAc$jexl_expression) == as.character(jexl_expression) & eval$MetricsByAc$filter_name == "called" & eval$MetricsByAc$novelty_name == novelty_name),]; +eval.getMetricsByAc <- function(eval, jexl, novelty="all") { + piece = subset(eval$MetricsByAc, + evaluation_name == "eval" & + comparison_name == "dbsnp" & + as.character(jexl_expression) == as.character(jexl) & + filter_name == "called" & + novelty_name == novelty + ); } plot.titvSpectrum <- function(eval, novelty_name="all", col=c("#FF6342", "#FF9675", "#5C92A4", "#88EEFF", "#55BBFF")) {