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Yup. I was right.

This commit is contained in:
Christopher Hartl 2012-01-26 12:54:11 -05:00
parent 7d059540a4
commit 9c6fda7e15
1 changed files with 4 additions and 0 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/AllelePair.java
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@ -35,6 +35,10 @@ public class AllelePair {
private Allele bottom; private Allele bottom;
public AllelePair(Genotype gt) { public AllelePair(Genotype gt) {
if ( gt.isNoCall() ) {
// do nothing
return;
}
if (gt.getPloidy() != 2) if (gt.getPloidy() != 2)
throw new ReviewedStingException("AllelePair must have ploidy of 2! incoming gt was"+gt.toBriefString()); throw new ReviewedStingException("AllelePair must have ploidy of 2! incoming gt was"+gt.toBriefString());