getFeatureClass() now returns Class<T> not Class to avoid yesterday's runtime error

public/java/src/org/broadinstitute/sting/gatk/refdata/features/refseq/RefSeqCodec.java

@@ -104,7 +104,7 @@ public class RefSeqCodec implements ReferenceDependentFeatureCodec<RefSeqFeature
     }
 
     @Override
-    public Class getFeatureType() {
+    public Class<RefSeqFeature> getFeatureType() {
         return RefSeqFeature.class;
     }
 }

public/java/src/org/broadinstitute/sting/gatk/refdata/features/table/TableCodec.java

@@ -51,7 +51,7 @@ public class TableCodec implements ReferenceDependentFeatureCodec {
     }
 
     @Override
-    public Class getFeatureType() {
+    public Class<TableFeature> getFeatureType() {
         return TableFeature.class;
     }
 

public/java/src/org/broadinstitute/sting/utils/codecs/completegenomics/CGVarCodec.java

@@ -117,7 +117,7 @@ public class CGVarCodec implements FeatureCodec {
         return new VariantContext("CGI", array[3], start, end, alleles, VariantContext.NO_NEG_LOG_10PERROR, null, attrs);
     }
 
-    public Class getFeatureType() {
+    public Class<VariantContext> getFeatureType() {
         return VariantContext.class;
     }
 

public/java/src/org/broadinstitute/sting/utils/codecs/hapmap/RawHapMapCodec.java

@@ -82,7 +82,7 @@ public class RawHapMapCodec implements FeatureCodec {
                 headerLine);
     }
 
-    public Class getFeatureType() {
+    public Class<RawHapMapFeature> getFeatureType() {
         return RawHapMapFeature.class;
     }
 

public/java/src/org/broadinstitute/sting/utils/codecs/snpEff/SnpEffCodec.java

@@ -222,7 +222,7 @@ public class SnpEffCodec implements FeatureCodec, SelfScopingFeatureCodec {
         return null;
     }
 
-    public Class getFeatureType() {
+    public Class<SnpEffFeature> getFeatureType() {
         return SnpEffFeature.class;
     }
 

public/java/src/org/broadinstitute/sting/utils/codecs/soapsnp/SoapSNPCodec.java

@@ -178,7 +178,7 @@ public class SoapSNPCodec implements FeatureCodec, NameAwareCodec {
     /**
      * @return VariantContext
      */
-    public Class getFeatureType() {
+    public Class<VariantContext> getFeatureType() {
         return VariantContext.class;
     }
 

public/java/src/org/broadinstitute/sting/utils/codecs/vcf/AbstractVCFCodec.java

@@ -263,7 +263,7 @@ public abstract class AbstractVCFCodec implements FeatureCodec, NameAwareCodec,
      *
      * @return the type of record
      */
-    public Class getFeatureType() {
+    public Class<VariantContext> getFeatureType() {
         return VariantContext.class;
     }