diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/duplicates/CountDuplicatesWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/duplicates/CountDuplicatesWalker.java index 91a68992f..78340f7b6 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/duplicates/CountDuplicatesWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/duplicates/CountDuplicatesWalker.java @@ -33,12 +33,12 @@ import org.broadinstitute.sting.utils.GenomeLoc; import java.util.List; /** - * a class to store the duplicates information we pass around + * a class to store the traversal information we pass around */ class DuplicateCount { - public int count = 0; - public int undupDepth = 0; - public int depth = 0; + public int count = 0; // the count of sites we were given + public int undupDepth = 0; // the unique read count + public int depth = 0; // the dupplicate read depth } /** @@ -96,11 +96,10 @@ public class CountDuplicatesWalker extends DuplicateWalker