From 9bf0d7250afbd1ed56b6ce5066ceef5b3bf9bd80 Mon Sep 17 00:00:00 2001
From: rpoplin <rpoplin@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 14 Jan 2010 13:40:14 +0000
Subject: [PATCH] Fixing the testOtherOutput UG integration test so it will
 run.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2580 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
index f99e37cfb..d5760a32e 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
@@ -223,7 +223,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
                         " -bm empirical" +
                         " -gm JOINT_ESTIMATE" +
 		        " -vf GELI",
-                3,
+                2,
                 Arrays.asList(md5s));
 
         executeTest(String.format("testOtherOutput"), spec);