From 9b87dcda4fbb3b3337cf108d56332347836caba7 Mon Sep 17 00:00:00 2001 From: Mark DePristo Date: Sat, 30 Jun 2012 16:23:11 -0400 Subject: [PATCH] Fixing remaining integration test errors. Adding missing ex2.bcf --- .../sting/gatk/walkers/beagle/BeagleIntegrationTest.java | 2 +- .../diagnostics/targets/DiagnoseTargetsIntegrationTest.java | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java index 8fe96b53d..869011a99 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java @@ -75,7 +75,7 @@ public class BeagleIntegrationTest extends WalkerTest { "--beagleR2:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.r2 "+ "--beagleProbs:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.gprobs.bgl "+ "--beaglePhased:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.phased.bgl "+ - "-L 20:1-70000 -o %s --no_cmdline_in_header -U LENIENT_VCF_PROCESSING",1,Arrays.asList("fbbbebfda35bab3f6f62eea2f0be1c01")); + "-L 20:1-70000 -o %s --no_cmdline_in_header -U LENIENT_VCF_PROCESSING",1,Arrays.asList("d8906b67c7f9fdb5b37b8e9e050982d3")); spec.disableShadowBCF(); executeTest("testBeagleChangesSitesToRef",spec); } diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java index 6d37ae2de..55b04f1b8 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java @@ -44,11 +44,11 @@ public class DiagnoseTargetsIntegrationTest extends WalkerTest { @Test(enabled = true) public void testSingleSample() { - DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "c1b89186cdfa48b26865bf9737433e1c"); + DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "9954b21163d3e66db232938ec509067f"); } @Test(enabled = true) public void testMultiSample() { - DTTest("testMultiSample ", "-I " + multiSample, "644e586e53c6f9bfd8e51e24f78da7b3"); + DTTest("testMultiSample ", "-I " + multiSample, "7c5277261e8e9dd74666f04843ffb09c"); } }