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Fixing remaining integration test errors. Adding missing ex2.bcf

This commit is contained in:
Mark DePristo 2012-06-30 16:23:11 -04:00
parent d7d140eb10
commit 9b87dcda4f
2 changed files with 3 additions and 3 deletions
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2
public/java/test/org/broadinstitute/sting/gatk/walkers/beagle/BeagleIntegrationTest.java
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@ -75,7 +75,7 @@ public class BeagleIntegrationTest extends WalkerTest {
"--beagleR2:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.r2 "+
"--beagleProbs:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.gprobs.bgl "+
"--beaglePhased:beagle /humgen/gsa-hpprojects/GATK/data/Validation_Data/EUR_beagle_in_test.phased.bgl "+
"-L 20:1-70000 -o %s --no_cmdline_in_header -U LENIENT_VCF_PROCESSING",1,Arrays.asList("fbbbebfda35bab3f6f62eea2f0be1c01"));
"-L 20:1-70000 -o %s --no_cmdline_in_header -U LENIENT_VCF_PROCESSING",1,Arrays.asList("d8906b67c7f9fdb5b37b8e9e050982d3"));
spec.disableShadowBCF();
executeTest("testBeagleChangesSitesToRef",spec);
}

4
public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java
View File

@ -44,11 +44,11 @@ public class DiagnoseTargetsIntegrationTest extends WalkerTest {
@Test(enabled = true)
public void testSingleSample() {
DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "c1b89186cdfa48b26865bf9737433e1c");
DTTest("testSingleSample ", "-I " + singleSample + " -max 75", "9954b21163d3e66db232938ec509067f");
}
@Test(enabled = true)
public void testMultiSample() {
DTTest("testMultiSample ", "-I " + multiSample, "644e586e53c6f9bfd8e51e24f78da7b3");
DTTest("testMultiSample ", "-I " + multiSample, "7c5277261e8e9dd74666f04843ffb09c");
}
}