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Using picard implementations for accessing aggregation directories. 

Added more utilities to PicardPrivate.
Revved picard.
This commit is contained in:
Khalid Shakir 2011-07-18 21:49:03 -04:00
parent 0ef37979cc
commit 9b446020f9
11 changed files with 9 additions and 10 deletions
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2
public/packages/PicardPrivate.xml
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@ -7,6 +7,8 @@
<class name="edu.mit.broad.picard.genotype.geli.GeliFileWriter" />
<class name="edu.mit.broad.picard.genotype.geli.GenotypeLikelihoods" />
<class name="edu.mit.broad.picard.util.PasteParser" />
<class name="edu.mit.broad.picard.util.PicardAggregationFsUtil" />
<class name="edu.mit.broad.picard.util.PicardFileSystemUtil" />
<class name="edu.mit.broad.picard.variation.KnownVariantCodecV2" />
<class name="edu.mit.broad.picard.variation.KnownVariantCodec" />
<class name="edu.mit.broad.picard.variation.KnownVariantFileHeader" />

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settings/repository/edu.mit.broad/picard-private-parts-1954.jar
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settings/repository/edu.mit.broad/picard-private-parts-1954.xml~
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@ -1,3 +0,0 @@
<ivy-module version="1.0">
<info organisation="edu.mit.broad" module="picard-private-parts" revision="1941" status="integration" publication="20110614114100" />
</ivy-module>

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settings/repository/edu.mit.broad/picard-private-parts-1959.jar 100644
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settings/repository/edu.mit.broad/picard-private-parts-1954.xml → settings/repository/edu.mit.broad/picard-private-parts-1959.xml
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@ -1,3 +1,3 @@
<ivy-module version="1.0">
<info organisation="edu.mit.broad" module="picard-private-parts" revision="1954" status="integration" publication="20110712113100" />
<info organisation="edu.mit.broad" module="picard-private-parts" revision="1959" status="integration" publication="20110718185300" />
</ivy-module>

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settings/repository/net.sf/picard-1.48.889.xml
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@ -1,3 +0,0 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="picard" revision="1.48.889" status="release" />
</ivy-module>

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settings/repository/net.sf/picard-1.48.889.jar → settings/repository/net.sf/picard-1.49.895.jar
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settings/repository/net.sf/picard-1.49.895.xml 100644
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@ -0,0 +1,3 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="picard" revision="1.49.895" status="release" />
</ivy-module>

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settings/repository/net.sf/sam-1.48.889.xml
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@ -1,3 +0,0 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="sam" revision="1.48.889" status="release" />
</ivy-module>

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settings/repository/net.sf/sam-1.48.889.jar → settings/repository/net.sf/sam-1.49.895.jar
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settings/repository/net.sf/sam-1.49.895.xml 100644
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@ -0,0 +1,3 @@
<ivy-module version="1.0">
<info organisation="net.sf" module="sam" revision="1.49.895" status="release" />
</ivy-module>