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Removing duplicated header args 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4770 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-12-01 20:16:53 +00:00
parent 9f03f09cc9
commit 99b942b0b4
1 changed files with 0 additions and 6 deletions
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6
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java
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@ -271,12 +271,6 @@ public class TableRecalibrationWalker extends ReadWalker<SAMRecord, SAMFileWrite
}
sb.setCharAt(sb.length()-2, ']');
sb.setCharAt(sb.length()-1, ' ');
sb.append("pQ=");
sb.append(PRESERVE_QSCORES_LESS_THAN);
sb.append(" maxQ=");
sb.append(MAX_QUALITY_SCORE);
sb.append(" smoothing=");
sb.append(SMOOTHING);
programRecord.setCommandLine(sb.toString());
List<SAMProgramRecord> oldRecords = header.getProgramRecords();