A faster implementation of the Plink Bed Reader that's optimized for SNP-major bed files. Reduced runtime from 102 minutes to 12 minutes. Partially tested.

Recover gracefully from completely correlated haplotype data: run Penalized IRLS to prevent divergence (usually one step). Tested.
This commit is contained in:
Christopher Hartl 2012-10-17 12:48:14 -04:00
parent 31be807664
commit 98b83421a3

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