Should read truth data from the parser options rather than direct from args

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2301 348d0f76-0448-11de-a6fe-93d51630548a

python/snpSelector.py

@@ -615,6 +615,12 @@ def main():
     fields = OPTIONS.fields.split(',')
 
     truthVCF = None
+    #print("LENGTH OF ARGS "+str(len(args)))
+
+    if OPTIONS.truth <> None:
+        truthVCF = OPTIONS.truth
+        readTruth(truthVCF)
+
     if len(args) > 1:
         truthVCF = args[1]
         TRUTH_CALLS = readTruth(truthVCF)
@@ -654,4 +660,4 @@ if __name__ == "__main__":
         p.sort_stats('time').print_stats(10)
         p.sort_stats('time', 'cum').print_stats(.5, 'init')
     else:
-        main()
+        main()