From 9876645a5d674aab0f18208b4ae222f61f5999a5 Mon Sep 17 00:00:00 2001 From: depristo Date: Thu, 28 Jan 2010 11:12:46 +0000 Subject: [PATCH] Now drives the walker by reference, not by reads, so we see even loci with no reads. This allows us to accurately calculate the true total callable area git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2720 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/genotyper/UnifiedGenotyper.java | 1 + 1 file changed, 1 insertion(+) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java index 38f4bc2af..0a6a3b861 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java @@ -50,6 +50,7 @@ import java.io.PrintStream; * multi-sample, and pooled data. The user can choose from several different incorporated calculation models. */ @Reference(window=@Window(start=-20,stop=20)) +@By(DataSource.REFERENCE) public class UnifiedGenotyper extends LocusWalker implements TreeReducible { @ArgumentCollection private UnifiedArgumentCollection UAC = new UnifiedArgumentCollection();