From 97b153f2fafd6a255817031caab179d4f794ffdc Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 8 Oct 2010 06:10:52 +0000
Subject: [PATCH] Quick fix

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4457 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/annotator/ChromosomeCounts.java          | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/annotator/ChromosomeCounts.java b/java/src/org/broadinstitute/sting/gatk/walkers/annotator/ChromosomeCounts.java
index ba3909244..e65ea8023 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/annotator/ChromosomeCounts.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/annotator/ChromosomeCounts.java
@@ -51,7 +51,7 @@ public class ChromosomeCounts implements InfoFieldAnnotation, StandardAnnotation
             return null;
         
         Map<String, Object> map = new HashMap<String, Object>();
-        VariantContextUtils.calculateChromosomeCounts(vc, map, false);
+        VariantContextUtils.calculateChromosomeCounts(vc, map, true);
         return map;
     }