zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Make command like args default to false. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1892 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2009-10-21 13:59:35 +00:00
parent 9b9744109c
commit 967128035e
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java
View File

@ -45,10 +45,10 @@ public class PowerBelowFrequencyWalker extends LocusWalker<Integer,Integer> {
int minMappingQuality = -1; int minMappingQuality = -1;
@Argument(fullName="ignoreForwardReads",doc="Use the forward reads at a site. Defaults to true.", required = false) @Argument(fullName="ignoreForwardReads",doc="Use the forward reads at a site. Defaults to true.", required = false)
boolean ignoreForwardReads = true; boolean ignoreForwardReads = false;
@Argument(fullName="ignoreReverseReads",doc="Use the reverse reads at a site. Defaults to true.", required = false) @Argument(fullName="ignoreReverseReads",doc="Use the reverse reads at a site. Defaults to true.", required = false)
boolean ignoreReverseReads = true; boolean ignoreReverseReads = false;
public void initialize() { public void initialize() {
if ( alleleFreq < 1 ) { if ( alleleFreq < 1 ) {