From 967128035ebcc81c137fb7a4affa394c63925c29 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 21 Oct 2009 13:59:35 +0000
Subject: [PATCH] Make command like args default to false.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1892 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/poolseq/PowerBelowFrequencyWalker.java       | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java
index 72dd8b0fe..3a5c20580 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/poolseq/PowerBelowFrequencyWalker.java
@@ -45,10 +45,10 @@ public class PowerBelowFrequencyWalker extends LocusWalker<Integer,Integer> {
     int minMappingQuality = -1;
 
     @Argument(fullName="ignoreForwardReads",doc="Use the forward reads at a site. Defaults to true.", required = false)
-    boolean ignoreForwardReads = true;
+    boolean ignoreForwardReads = false;
 
     @Argument(fullName="ignoreReverseReads",doc="Use the reverse reads at a site. Defaults to true.", required = false)
-    boolean ignoreReverseReads = true;
+    boolean ignoreReverseReads = false;
 
     public void initialize() {
         if ( alleleFreq < 1 ) {