Make command like args default to false.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1892 348d0f76-0448-11de-a6fe-93d51630548a
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@ -45,10 +45,10 @@ public class PowerBelowFrequencyWalker extends LocusWalker<Integer,Integer> {
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int minMappingQuality = -1;
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@Argument(fullName="ignoreForwardReads",doc="Use the forward reads at a site. Defaults to true.", required = false)
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boolean ignoreForwardReads = true;
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boolean ignoreForwardReads = false;
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@Argument(fullName="ignoreReverseReads",doc="Use the reverse reads at a site. Defaults to true.", required = false)
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boolean ignoreReverseReads = true;
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boolean ignoreReverseReads = false;
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public void initialize() {
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if ( alleleFreq < 1 ) {
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