From 96571b55bee8d8d111a2a3ff26e356ad66b45181 Mon Sep 17 00:00:00 2001 From: hanna Date: Fri, 29 Apr 2011 13:59:34 +0000 Subject: [PATCH] Disable caching of ReadShards by the GenomeLocProcessingTracker (at least temporarily). Unfortunately this does not completely fix the IndelRealigner exception that Ryan is seeing, but it helps things quite a bit. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5710 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/utils/threading/GenomeLocProcessingTracker.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/utils/threading/GenomeLocProcessingTracker.java b/java/src/org/broadinstitute/sting/utils/threading/GenomeLocProcessingTracker.java index 942886326..419a70da0 100644 --- a/java/src/org/broadinstitute/sting/utils/threading/GenomeLocProcessingTracker.java +++ b/java/src/org/broadinstitute/sting/utils/threading/GenomeLocProcessingTracker.java @@ -55,7 +55,7 @@ import java.util.*; public abstract class GenomeLocProcessingTracker { private final static Logger logger = Logger.getLogger(FileBackedGenomeLocProcessingTracker.class); private final static SimpleDateFormat STATUS_FORMAT = new SimpleDateFormat("HH:mm:ss,SSS"); - private final static int DEFAULT_OWNERSHIP_ITERATOR_SIZE = 20; + private final static int DEFAULT_OWNERSHIP_ITERATOR_SIZE = 1; /** * Useful state strings for printing status