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Disable caching of ReadShards by the GenomeLocProcessingTracker (at least 

temporarily).  Unfortunately this does not completely fix the IndelRealigner 
exception that Ryan is seeing, but it helps things quite a bit.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5710 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2011-04-29 13:59:34 +00:00
parent a5b96e0e04
commit 96571b55be
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/utils/threading/GenomeLocProcessingTracker.java
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@ -55,7 +55,7 @@ import java.util.*;
public abstract class GenomeLocProcessingTracker {
private final static Logger logger = Logger.getLogger(FileBackedGenomeLocProcessingTracker.class);
private final static SimpleDateFormat STATUS_FORMAT = new SimpleDateFormat("HH:mm:ss,SSS");
private final static int DEFAULT_OWNERSHIP_ITERATOR_SIZE = 20;
private final static int DEFAULT_OWNERSHIP_ITERATOR_SIZE = 1;
/**
* Useful state strings for printing status