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Fixes to the queue pipeline tests to account for the new directory structure.

This commit is contained in:
David Roazen 2011-07-01 13:13:24 -04:00
parent 4b17f34640
commit 9644f104c4
2 changed files with 4 additions and 4 deletions
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2
public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/ExampleCountLociPipelineTest.scala
View File

@ -35,7 +35,7 @@ class ExampleCountLociPipelineTest {
val spec = new PipelineTestSpec
spec.name = "countloci"
spec.args = Array(
" -S scala/qscript/examples/ExampleCountLoci.scala",
" -S public/scala/qscript/examples/ExampleCountLoci.scala",
" -R " + BaseTest.hg18Reference,
" -I " + BaseTest.validationDataLocation + "small_bam_for_countloci.bam",
" -o " + testOut).mkString

6
public/scala/test/org/broadinstitute/sting/queue/pipeline/examples/HelloWorldPipelineTest.scala
View File

@ -32,7 +32,7 @@ class HelloWorldPipelineTest {
def testHelloWorld {
val spec = new PipelineTestSpec
spec.name = "HelloWorld"
spec.args = "-S scala/qscript/examples/HelloWorld.scala"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala"
PipelineTest.executeTest(spec)
}
@ -40,7 +40,7 @@ class HelloWorldPipelineTest {
def testHelloWorldWithPrefix {
val spec = new PipelineTestSpec
spec.name = "HelloWorldWithPrefix"
spec.args = "-S scala/qscript/examples/HelloWorld.scala -jobPrefix HelloWorld"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPrefix HelloWorld"
PipelineTest.executeTest(spec)
}
@ -48,7 +48,7 @@ class HelloWorldPipelineTest {
def testHelloWorldWithPriority {
val spec = new PipelineTestSpec
spec.name = "HelloWorldWithPriority"
spec.args = "-S scala/qscript/examples/HelloWorld.scala -jobPriority 100"
spec.args = "-S public/scala/qscript/examples/HelloWorld.scala -jobPriority 100"
PipelineTest.executeTest(spec)
}
}