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Removed some debugging print statements. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@707 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2009-05-14 17:12:42 +00:00
parent 2f42a643a8
commit 959cf09d4b
1 changed files with 0 additions and 3 deletions
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java/src/org/broadinstitute/sting/secondarybase/AnnotateSecondaryBase.java
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@ -60,9 +60,6 @@ public class AnnotateSecondaryBase extends CommandLineProgram {
while ((rr = iparser.next()) != null) { while ((rr = iparser.next()) != null) {
FourProbRead fpr = model.call(rr); FourProbRead fpr = model.call(rr);
System.out.println(rr.getSequenceAsString());
System.out.println(fpr.getPrimaryBaseSequence());
SAMRecord sr = constructSAMRecord(rr, fpr, sfh, RUN_BARCODE); SAMRecord sr = constructSAMRecord(rr, fpr, sfh, RUN_BARCODE);
sfw.addAlignment(sr); sfw.addAlignment(sr);
} }