From 959cf09d4bf6a1790a7f1474f33fb7e43e0f0578 Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 14 May 2009 17:12:42 +0000
Subject: [PATCH] Removed some debugging print statements.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@707 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/secondarybase/AnnotateSecondaryBase.java             | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/secondarybase/AnnotateSecondaryBase.java b/java/src/org/broadinstitute/sting/secondarybase/AnnotateSecondaryBase.java
index 03d94a298..010455ce7 100755
--- a/java/src/org/broadinstitute/sting/secondarybase/AnnotateSecondaryBase.java
+++ b/java/src/org/broadinstitute/sting/secondarybase/AnnotateSecondaryBase.java
@@ -60,9 +60,6 @@ public class AnnotateSecondaryBase extends CommandLineProgram {
         while ((rr = iparser.next()) != null) {
             FourProbRead fpr = model.call(rr);
 
-            System.out.println(rr.getSequenceAsString());
-            System.out.println(fpr.getPrimaryBaseSequence());
-
             SAMRecord sr = constructSAMRecord(rr, fpr, sfh, RUN_BARCODE);
             sfw.addAlignment(sr);
         }