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Should've been calling queryOverlapping in locus mode. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@360 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-04-10 20:22:04 +00:00
parent a2a38a4bbb
commit 95753e1b34
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMBAMDataSource.java
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@ -113,7 +113,7 @@ public class SAMBAMDataSource implements SimpleDataSource {
// we do different things for locus and read modes
if (locusMode) {
iter.query(location.getContig(), (int) location.getStart(), (int) location.getStop(), true);
iter.queryOverlapping(location.getContig(), (int) location.getStart(), (int) location.getStop());
} else {
iter.queryContained(location.getContig(), (int) location.getStart(), (int) location.getStop());
}