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Updated MendelianViolationEvaluator integration test

This commit is contained in:
Laurent Francioli 2011-11-30 14:44:15 +01:00
parent f49dc5c067
commit 9574be0394
1 changed files with 1 additions and 1 deletions
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2
public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
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@ -296,7 +296,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
String vcfFile = "/MendelianViolationEval.vcf"; String vcfFile = "/MendelianViolationEval.vcf";
String pedFile = "/MendelianViolationEval.ped"; String pedFile = "/MendelianViolationEval.ped";
WalkerTestSpec spec = new WalkerTestSpec("-T VariantEval -R "+b37KGReference+" --eval " + variantEvalTestDataRoot + vcfFile + " -ped "+ variantEvalTestDataRoot + pedFile +" -noEV -EV MendelianViolationEvaluator -L 1:10109-10315 -o %s", WalkerTestSpec spec = new WalkerTestSpec("-T VariantEval -R "+b37KGReference+" --eval " + variantEvalTestDataRoot + vcfFile + " -ped "+ variantEvalTestDataRoot + pedFile +" -noEV -EV MendelianViolationEvaluator -L 1:10109-10315 -o %s -mvq 0 -noST",
1, 1,
Arrays.asList("85a8fc01a1f50839667bfcd04155f735")); Arrays.asList("85a8fc01a1f50839667bfcd04155f735"));
executeTestParallel("testVEMendelianViolationEvaluator" + vcfFile, spec); executeTestParallel("testVEMendelianViolationEvaluator" + vcfFile, spec);