From 9574be0394d9e61255548c63a95348c52fc26b68 Mon Sep 17 00:00:00 2001
From: Laurent Francioli <lfran@broadinstitute.org>
Date: Wed, 30 Nov 2011 14:44:15 +0100
Subject: [PATCH] Updated MendelianViolationEvaluator integration test

---
 .../gatk/walkers/varianteval/VariantEvalIntegrationTest.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
index 13876ff83..e2a5d89a7 100755
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
@@ -296,7 +296,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
         String vcfFile = "/MendelianViolationEval.vcf";
         String pedFile = "/MendelianViolationEval.ped";
 
-        WalkerTestSpec spec = new WalkerTestSpec("-T VariantEval -R "+b37KGReference+" --eval " + variantEvalTestDataRoot + vcfFile + " -ped "+ variantEvalTestDataRoot + pedFile +" -noEV -EV MendelianViolationEvaluator -L 1:10109-10315 -o %s",
+        WalkerTestSpec spec = new WalkerTestSpec("-T VariantEval -R "+b37KGReference+" --eval " + variantEvalTestDataRoot + vcfFile + " -ped "+ variantEvalTestDataRoot + pedFile +" -noEV -EV MendelianViolationEvaluator -L 1:10109-10315 -o %s -mvq 0 -noST",
                 1,
                 Arrays.asList("85a8fc01a1f50839667bfcd04155f735"));
         executeTestParallel("testVEMendelianViolationEvaluator" + vcfFile, spec);