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Adding integration test for indels in VF 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5227 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-02-11 16:58:57 +00:00
parent c630701a76
commit 9554df1a7c
1 changed files with 8 additions and 0 deletions
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8
java/test/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationIntegrationTest.java
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@ -75,4 +75,12 @@ public class VariantFiltrationIntegrationTest extends WalkerTest {
Arrays.asList("26e5b4ee954c9e0b5eb044afd4b88ee9")); Arrays.asList("26e5b4ee954c9e0b5eb044afd4b88ee9"));
executeTest("test genotype filter #2", spec); executeTest("test genotype filter #2", spec);
} }
@Test
public void testDeletions() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " --filterExpression 'QUAL < 100' --filterName foo -B:variant,VCF " + validationDataLocation + "twoDeletions.vcf", 1,
Arrays.asList("e63b58be33c9126ad6cc55489aac539b"));
executeTest("test deletions", spec);
}
} }