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Adding an integration test (against hg18 this time) that requires on-the-fly sorting in order to work properly. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4500 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-10-15 07:45:21 +00:00
parent 9f54170dff
commit 954dd84f51
1 changed files with 9 additions and 0 deletions
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9
java/test/org/broadinstitute/sting/gatk/walkers/variantutils/LiftoverVariantsIntegrationTest.java
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@ -43,4 +43,13 @@ public class LiftoverVariantsIntegrationTest extends WalkerTest {
Arrays.asList("1637877892a019061e74eb3d9a9d100f"));
executeTest("test b36 to hg19", spec);
}
@Test
public void testhg18Tohg19Unsorted() {
WalkerTestSpec spec = new WalkerTestSpec(
"-T LiftoverVariants -o %s -R " + hg18Reference + " -B:variant,vcf " + validationDataLocation + "liftover_test.vcf -chain " + validationDataLocation + "hg18ToHg19.broad.over.chain -dict /seq/references/Homo_sapiens_assembly19/v0/Homo_sapiens_assembly19.dict",
1,
Arrays.asList("ce71a6d40f7375826e31adb3832d2fe3"));
executeTest("test hg18 to hg19, unsorted", spec);
}
}