diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java index 94902e828..4fa6d0bbf 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java @@ -194,11 +194,6 @@ public class VariantAnnotator extends RodWalker implements Ann System.exit(0); } - @Override - public SampleDB getSampleDB() { - return super.getSampleDB(); - } - /** * Prepare the output file and the list of available features. */ diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java index f1f61d071..4b3aa4864 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java @@ -127,12 +127,12 @@ public class VariantsToTable extends RodWalker { * multi-allelic INFO field values can be lists of values. */ @Advanced - @Argument(fullName="keepMultiAllelic", shortName="KMA", doc="If provided, we will not require the site to be biallelic", required=false) - public boolean keepMultiAllelic = false; + @Argument(fullName="keepMultiAllelic", shortName="KMA", doc="If provided, we will not require the site to be biallelic", required=false) + public boolean keepMultiAllelic = false; @Hidden @Argument(fullName="logACSum", shortName="logACSum", doc="Log sum of AC instead of max value in case of multiallelic variants", required=false) - public boolean logACSum = false; + public boolean logACSum = false; /** * By default, this tool throws a UserException when it encounters a field without a value in some record. This