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Adding more specific error message when one of the scripts doesn't exist. 

--Previously it gave a cryptic message:
----IO error while decoding blarg.script with UTF-8
----Please try specifying another one using the -encoding option
This commit is contained in:
Louis Bergelson 2013-10-03 16:52:48 -04:00
parent 5a2ef37ead
commit 9498950b1c
1 changed files with 6 additions and 0 deletions
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6
public/scala/src/org/broadinstitute/sting/queue/QScriptManager.scala
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@ -36,6 +36,7 @@ import org.apache.log4j.Level
import org.broadinstitute.sting.queue.util.TextFormatUtils._ import org.broadinstitute.sting.queue.util.TextFormatUtils._
import org.broadinstitute.sting.utils.classloader.JVMUtils import org.broadinstitute.sting.utils.classloader.JVMUtils
import scala.reflect.internal.util.{FakePos, NoPosition, Position, StringOps} import scala.reflect.internal.util.{FakePos, NoPosition, Position, StringOps}
import org.broadinstitute.sting.utils.exceptions.UserException
/** /**
* Plugin manager for QScripts which loads QScripts into the current class loader. * Plugin manager for QScripts which loads QScripts into the current class loader.
@ -46,6 +47,11 @@ class QScriptManager() extends Logging {
* Heavily based on scala/src/compiler/scala/tools/ant/Scalac.scala * Heavily based on scala/src/compiler/scala/tools/ant/Scalac.scala
*/ */
def loadScripts(scripts: Seq[File], tempDir: File) { def loadScripts(scripts: Seq[File], tempDir: File) {
// Make sure the scripts actually exist.
scripts.foreach{
file => if( !file.exists()) throw new UserException.CouldNotReadInputFile(file, "it does not exist.")
}
if (scripts.size > 0) { if (scripts.size > 0) {
val settings = new Settings((error: String) => logger.error(error)) val settings = new Settings((error: String) => logger.error(error))
settings.deprecation.value = true settings.deprecation.value = true