From 944e1c299df52909d46deb9eae0138376e0b8001 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Wed, 22 Aug 2012 13:07:13 -0400 Subject: [PATCH] Docs for --keepOriginalAC were wrong in SelectVariants --- .../sting/gatk/walkers/variantutils/SelectVariants.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java index 4c0c0cabf..fc29a7f02 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariants.java @@ -265,7 +265,7 @@ public class SelectVariants extends RodWalker implements TreeR @Argument(fullName="restrictAllelesTo", shortName="restrictAllelesTo", doc="Select only variants of a particular allelicity. Valid options are ALL (default), MULTIALLELIC or BIALLELIC", required=false) private NumberAlleleRestriction alleleRestriction = NumberAlleleRestriction.ALL; - @Argument(fullName="keepOriginalAC", shortName="keepOriginalAC", doc="Don't update the AC, AF, or AN values in the INFO field after selecting", required=false) + @Argument(fullName="keepOriginalAC", shortName="keepOriginalAC", doc="Store the original AC, AF, and AN values in the INFO field after selecting (using keys AC_Orig, AF_Orig, and AN_Orig)", required=false) private boolean KEEP_ORIGINAL_CHR_COUNTS = false; /**