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intermediate commit to aid in debugging HC / exact model changes. HC integration tests will still fail

This commit is contained in:
Ryan Poplin 2012-03-18 15:50:27 -04:00
parent c4f4d16490
commit 943b1d34f8
1 changed files with 8 additions and 0 deletions
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8
public/java/test/org/broadinstitute/sting/utils/MathUtilsUnitTest.java
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@ -225,6 +225,12 @@ public class MathUtilsUnitTest extends BaseTest {
@Test
public void testApproximateLog10SumLog10() {
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {0.0}), 0.0, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {-5.15}), -5.15, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {130.0}), 130.0, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {-0.145}), -0.145, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(0.0, 0.0), Math.log10(Math.pow(10.0, 0.0) + Math.pow(10.0, 0.0)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-1.0, 0.0), Math.log10(Math.pow(10.0, -1.0) + Math.pow(10.0, 0.0)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(0.0, -1.0), Math.log10(Math.pow(10.0, 0.0) + Math.pow(10.0, -1.0)), 1e-3);
@ -237,6 +243,8 @@ public class MathUtilsUnitTest extends BaseTest {
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-29.1, -27.6), Math.log10(Math.pow(10.0, -29.1) + Math.pow(10.0, -27.6)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-0.12345, -0.23456), Math.log10(Math.pow(10.0, -0.12345) + Math.pow(10.0, -0.23456)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-15.7654, -17.0101), Math.log10(Math.pow(10.0, -15.7654) + Math.pow(10.0, -17.0101)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-0.12345, Double.NEGATIVE_INFINITY), -0.12345, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(-15.7654, Double.NEGATIVE_INFINITY), -15.7654, 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {0.0, 0.0}), Math.log10(Math.pow(10.0, 0.0) + Math.pow(10.0, 0.0)), 1e-3);
Assert.assertEquals(MathUtils.approximateLog10SumLog10(new double[] {-1.0, 0.0}), Math.log10(Math.pow(10.0, -1.0) + Math.pow(10.0, 0.0)), 1e-3);