More BCF2 improvements

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-- Refactored setting of contigs from VCFWriterStub to VCFUtils.  Necessary for proper BCF working
-- Added VCFContigHeaderLine that manages the order for sorting, so we now emit contigs in the proper order.
-- Cleaned up VCFHeader operations
-- BCF now uses the right header files correctly when encoding / decoding contigs
-- Support for string dictionary at standard positions in the VCF

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This commit is contained in:

Mark DePristo 2012-05-09 18:51:02 -04:00

parent 3afbc50511

commit 931b575748

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