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Since IntervalCleaner is gone for good, it is sensible to update the package to refer to the new IndelRealigner instead 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2883 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2010-02-24 16:42:56 +00:00
parent 5df37968de
commit 9306041cf4
1 changed files with 1 additions and 2 deletions
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packages/LocalRealignmentAroundIndels.xml
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@ -6,8 +6,7 @@
<dependencies>
<!-- Local realignment around indels -->
<class name="org.broadinstitute.sting.gatk.walkers.indels.RealignerTargetCreator" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IntervalCleanerWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelRealigner" />
</dependencies>
</executable>
</package>