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Put a major.minor version into the GATK Javadoc for reading. Also, 

update some straggler packages to the new package-info.java format introduced in 1.5.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2604 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-01-15 21:48:30 +00:00
parent 3063224446
commit 930082314a
11 changed files with 22 additions and 56 deletions
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4
java/src/org/broadinstitute/sting/gatk/package-info.java
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@ -1,5 +1,5 @@
/**
* Provides map/reduce application framework highly optimized for
* analysis of sequencing data.
* Provides map/reduce application framework highly optimized for analysis of sequencing data.
* @version 1.0
*/
package org.broadinstitute.sting.gatk;

4
java/src/org/broadinstitute/sting/utils/cmdLine/package-info.java 100644
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@ -0,0 +1,4 @@
/**
* Parses a wide variety of command-line arguments in single-pass and multipass strategies.
*/
package org.broadinstitute.sting.utils.cmdLine;

11
java/src/org/broadinstitute/sting/utils/cmdLine/package.html
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@ -1,11 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<html>
<head>
</head>
<body bgcolor="white">
Parses a wide variety of command-line arguments in single-pass and
multipass strategies.
</body>
</html>

4
java/src/org/broadinstitute/sting/utils/fasta/package-info.java 100644
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@ -0,0 +1,4 @@
/**
* Provides services and utilities for fast random access to reference sequence files.
*/
package org.broadinstitute.sting.utils.fasta;

11
java/src/org/broadinstitute/sting/utils/fasta/package.html
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@ -1,11 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<html>
<head>
</head>
<body bgcolor="white">
Provides services and utilities for fast random access to reference
sequence files.
</body>
</html>

4
java/src/org/broadinstitute/sting/utils/package-info.java 100644
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@ -0,0 +1,4 @@
/**
* Provides tools that have use across a wide range of Sting and GenomeAnalysisTK applications and tools.
*/
package org.broadinstitute.sting.utils;

11
java/src/org/broadinstitute/sting/utils/package.html
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@ -1,11 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<html>
<head>
</head>
<body bgcolor="white">
Provides tools that have use across a wide range of Sting and
GenomeAnalysisTK applications and tools.
</body>
</html>

4
java/src/org/broadinstitute/sting/utils/sam/package-info.java 100644
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@ -0,0 +1,4 @@
/**
* Generates mock reads, headers, and other read-oriented data, largely for consumption by the unit testing framework.
*/
package org.broadinstitute.sting.utils.sam;

11
java/src/org/broadinstitute/sting/utils/sam/package.html
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@ -1,11 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<html>
<head>
</head>
<body bgcolor="white">
Generates mock reads, headers, and other read-oriented data, largely
for consumption by the unit testing framework.
</body>
</html>

4
java/src/org/broadinstitute/sting/utils/threading/package-info.java 100644
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@ -0,0 +1,4 @@
/**
* Provides tools for managing threads, thread pools, and parallelization in general.
*/
package org.broadinstitute.sting.utils.threading;

10
java/src/org/broadinstitute/sting/utils/threading/package.html
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@ -1,10 +0,0 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<html>
<head>
</head>
<body bgcolor="white">
Provides tools for managing threads, thread pools, and parallelization
in general.
</body>
</html>